Publications

International Journal

1. Goli RC, Chishi KG, Mahar K, Ganguly I, Singh S, Dixit SP, Sruthi OS, Choudhary S, Diwakar V, Rathi P, Chinnareddyvari CS, Dige M, Metta M, Kumar A, Aderao GN, Sukhija N and Kanaka KK. Genome wide locus-specific ancestry analysis revealed adaptive admixtures in crossbred cattle of India. Scientific Reports. 2025, 15(1):17069; doi:10.1038/s41598-025-01971-7.

2. Kanaka KK, Ganguly I, Singh S, Kuralkar SV, Dixit S, Sukhija N and Goli RC. RASEL: An Ensemble Model for Selection of Core SNPs and Its Application for Identification and Classification of Cattle Breeds. Biochemical Genetics. 2025; doi:10.21203/rs.3.rs-6048799/v1.

3. Mehla K, Goli RC, Kar D, Ganguly I, Singh S and Dixit SP. Comparative insights into X-chromosome and autosomal autozygosity in zebu cattle. The Nucleus. 2025; doi:10.1007/s13237-025-00586-7.

4. Sarath Kumar T, Singh S, Ganguly I and Dixit SP. Mitogenome diversity and evolution of Bos indicus cattle in India. Gene. 2025, 936:149096; doi:10.1016/j.gene.2024.149096.

5. Sukhija N, Ganguly I, Kanaka K, Dixit SP, Singh S, Bhatia A, Goli RC and Rathi P. Utilitarian Selection signatures Co-localized with Copy Number Variation Regions in Indian Goat Breeds revealed through Whole Genome Re-Sequencing. Genome. 2025; doi:10.1139/gen-2025-0029.

6. Sukhija N, Ganguly I, Kanaka KK, Dixit SP, Singh S, Bhatia A, Goli RC and Rathi P. Genome wide copy number diversity in Indian goat breeds scaled to world-wide breeds. Small Ruminant Research. 2025, 249:107525; doi:10.1016/j.smallrumres.2025.107525.

7. Sukhija N, Kanaka KK, Ganguly I, Dixit SP, Singh S, Goli RC, Rathi P, Nandini PB and Koloi S. Cataloging copy number variation regions and allied diversity in goat breeds spanning pan India. Mammalian Genome. 2025, 36(2):523–540; doi:10.1007/s00335-025-10122-2.

8. Yadav A, Singh S, Dharamshaw CA, Ganguly I, Chinnareddyvari CS and Dixit SP. Comparative genome analysis of international transboundary cattle breeds. Gene. 2025, 960(12):149515; doi:10.1016/j.gene.2025.149515.

9. Yadav R, Vanzampuii ZST, Dixit S, Singh S, Bhatia AK, Iram D and Ganguly I. Genetic signatures of meat type Kanniadu goat: A genome-wide exploration. Small Ruminant Research. 2025, 251:107564; doi:10.1016/j.smallrumres.2025.107564.

10. Choudhary A, Nidhishree NS, Pundir RK, Asaf MVN, Mishra A, Raut AA, Agarwal M and Kumar A. Chicken pulmonary micro RNAs targeting the PB2 (segment 1) of avian influenza virus. Animal Research and One Health. 2025, 00:1–14; doi:10.1002/aro2.70034.

11. Ahmad SF, Gangwar M, Kumar A, Kumar A, Dige MS, Jha GK, Gaur GK and Dutt T. Dissecting genomes of multiple yak populations: unveiling ancestry and high-altitude adaptation through whole-genome re-sequencing analysis. BMC Genomics. 2025, 26 (1):214; doi:10.1186/s12864-025-11387-2.

12. Vijh RK, Arora R, Sharma U, Raheja M, Kapoor P, Ahlawat S and Sharma R. Development and validation of a high-density SNP chip tailored for genomic analysis in Indian backyard chickens. British Poultry Science. 2025, 66(6):1-9; doi:10.1080/00071668.2025.2500343.

13. Parsad R, Ahlawat S, Chhabra P, Sharma U, Arora R, Sharma R, Gera R and Bagiyal M. Genomic insights into milk production, growth and adaptation traits in Jamunapari and Bagiyal goats through whole-genome re-sequencing. Small Ruminant Research. 2025, 252:107600; doi:10.1016/j.smallrumres.2025.107600.

14. Parsad R, Ahlawat S, Vasu M, Chhabra P, Sharma U, Arora R and Sharma R. Genome-wide selective sweep analysis in high-altitude Changthangi goats reveals candidate genes for pashmina fiber production. Mammalian Genome. 2025, 36(4):1098-1111; doi:10.1007/s00335-025-10155-7.

15. Bagiyal M, Ahlawat S, Chhabra P, Sharma U, Arora R, Sharma R, Khatak S, Parsad R and Gera R. Comparative liver transcriptomics of Kadaknath and Aseel chickens reveals molecular basis of their unique nutritional and metabolic traits. British Poultry Science. 2025; doi:10.1080/00071668.2025.2562145.

16. Vasu M, Ahlawat S, Arora R, Sharma R, Mohan NH, Mir MA and Singh MK. Identification and validation of stable reference genes for quantitative PCR in small ruminants under high-altitude hypoxic and tropical conditions. Small Ruminant Research. 2025, 253:107651; doi:10.1016/j.smallrumres.2025.107651.

17. Kumar A, Dige M, Arora R, Niranjan SK, Ahlawat S, Sharma R, Kour A, Ahmad SF, Raja KN, Singh KV, Sharma U, Raheja M, Garsa AK, Dureja V, Maggon M, Yadav S, Popli K and Vijh RK. Development and validation of high-density SNP array for genomic studies in Indian yak populations. BMC Genome Data. 2025, 27(1); doi:10.1186/s12863-026-01404-y.

18. Barkathullah N, Sonowal J, Patel CL, Kumar KR and Mishra B. Molecular signatures of Capripox virus: In-silico RFLP as a diagnostic differentiator. International Journal of Advanced Biochemistry Research. 2025, 9(7S):84-86; doi:10.33545/26174693.2025.v9.i7Sb.4745.

19. Garg V, Mukesh M, Kumar U, Kumar D, Mahajan R, Kataria RS, Kumari P and Sodhi M. Characterization of metabolite profiles in milk derived exosomes from indicus, crossbred and taurine cows by proton nuclear magnetic resonance analysis. Food Chemistry. 2025, 473:143015; doi:10.1016/j.foodchem.2025.143015.

20. Preeti, Mukesh M, Singh P, Dubey SK, Bhakri G, Kumar A, Chaudhary V, Kataria RS, Niranjan SK, Mohanty AK and Sodhi M. Biochemical Profiles of High Fat Diet Mice Model with Feeding of Cow Milk representing different beta casein genotypes with reference of A1/A2 allele. Ecology, Environment & Conservation. 2025, 31(1):118-125); doi:10.53550/EEC.2025.v31i01.022.

21. Bhagat, Vandana, Bhonsle D, Sodhi M, Mukherjee K, Kataria RS, Santra AK, Gendley MK and Khune VN. Characterization and genetic diversity analysis of lesser-known goat population of northern hills of Chhattisgarh. Scientific Reports. 2025, 15:45761; doi:10.1038/s41598-025-28568-4.

22. Roshan, Mayank, Vats A, Bajwa KK, Sharma S, Thambiraja M, Sodhi M, Singh D, Yennamalli RM and Onteru SK. Kangayam and Tharparkar cattle exhibit higher duplications in innate immune genes compared to Sahiwal, Gir, Karan Fries, and Holstein Friesian: insights from an array comparative genomic hybridization. Mammalian Genome. 2025, 36(3):812-826; doi:10.1007/s00335-025-10136-w.

23. Parsad R, Bagiyal M, Malhotra S, Arora R and Sonika A. Hypoxia-Inducible Factor genes: Molecular architecture and regulatory dynamics of Hypoxia-Inducible Factors in livestock: A narrative review. International Journal of Biological Macromolecules. 2025, 12:149673; doi:10.1016/j.ijbiomac.2025.149673.

24. Bagiyal M, Ahlawat S, Arora R, Sharma R, Khatak S, Chhabra P, Sharma U, Parsad R and Gera R. Comparative RNA-seq profiling of hepatic transcriptomes in Kadaknath and commercial broiler chickens at distinct growth stages. Gene Reports. 2025, 43:102473; doi:10.1016/j.genrep.2026.102473.

25. Arora R, Ahlawat S and Sharma R. From heritage to high-tech: Genomics for Indian chicken breeds. Document No.148/2025 ISBN 9789383537914

26. Amarjeet, Kumar U, Sodhi M, Kumar D, Vivek P, Niranjan SK, Kataria RS, Kumar S and Mukesh M. Characterizing metabolome signature of colostrum, transition and mature milk of indigenous cows (Bos indicus) adapted to high altitude environment of Leh-Ladakh. Food Chemistry. 2025, 464:141767; doi:10.1016/j.foodchem.2024.141767.

27. Tiwari M, Sodhi M, Chanda D, Kataria RS, Niranjan SK, Singh I, Bharti VK and Mukesh M. Deciphering genomic basis of unique adaptation of Ladakhi cattle to Trans-Himalayan high-altitude region of Leh-Ladakh in India. Gene. 2025, 942:149251; doi:10.1016/j.gene.2025.149251.

28. Tiwari M, Gujar G, Ponsuksili S, Shashank CG, Sharma S, Sodhi M and Mukesh M. Exploring the genetic footprints of high altitude adapted humans and livestock. Mammalian Genome. 2025, 36(4):1005-1028; doi:10.1007/s00335-025-10161-9.

29. Chitkara, Meenakshi, Gurao A, Kaur H, Dige MS, Sodhi M, Mukesh M and Kataria RS. Omics approaches to understand impact of heat stress on semen quality and fertility in bovines. Reproduction Science. 2025, 274:107786; doi:10.1016/j.anireprosci.2025.107786.

30. Vasisth R, Karpenahalli Ranganatha Sriranga, Chitkara M, Gurao A, Singh LP, Dige MS, Sodhi M, Mukesh M and Kataria RS. Serum Biochemical and Gene Expression Changes in the Spermatozoa of Buffalo Bulls Under Heat Stress. Biochemical Genetics. 2025, 64(2):2020-2047; doi:10.1007/s10528-025-11122-2.

National Journal

1. Mishra AK, Raja KN, Vinoo R, Narayan Rao G and Sagar G. Phenotypic characterization of Nagavali sheep of Andhra Pradesh and husbandry practices adopted by farmers. Indian Journal of Small Ruminants. 2025, 31(1):16-19; doi:10.5958/0973-9718.2025.00021.4.

2. Gera R, Mishra AK, Arora R, Parsad R, Bagiyal M, Chhabra P, Sharma U, Ahlawat S, Sharma R and Kumar R. High Altitude Adaptation in Livestock and Poultry: Exploring Morphological, Physiological, Biochemical and Omic Insights: A Review. Indian Journal of Animal Research. 2025, 59(3):357-364; doi:10.18805/IJAR.B-5416.

3. Kumar A, Mishra AK, Kumar A and Shahi BN. Indigenous Livestock Wealth of Uttar Pradesh and Uttarakhand States of India - Status and Prospects for Characterization. Journal of Livestock Biodiversity. 2025, 14(1):13-19.

4. Kumar A, Mishra AK, Arora R, Kumar A, Singh AK and Shahi BN. Phenotypic Mapping of Animal Genetic Resources in Dehradun District of Uttarakhand. Journal of Livestock Biodiversity. 2025, 14(1):46-48; Article URL: https://epubs.icar.org.in/index.php/JLB/article/view/170904

5. Shahi BN, Kumar D, Kumar S, Mishra AK and Kumar A. Characterization of the Indigenous Kow Bakar Black Goat of Uttarakhand. Journal of Livestock Biodiversity. 2025, 14(1):49-52; Article URL: https://epubs.icar.org.in/index.php/JLB/article/view/170389

6. Shahi BN, Kumar D, Kumar S, Mishra AK and Kumar A. Kow Debar: An Indigenous Black Sheep Population from the Hills of Uttarakhand. Journal of Livestock Biodiversity. 2025, 14(1):80-83; Article URL: https://epubs.icar.org.in/index.php/JLB/article/view/169096

7. Deori S, Ethman A Marak, Katiyar R, Sarma M, Islam R, Das S, Chakravarty H, Paul DR, Ghatak S, Mishra AK, Rajkumar U and Doley S. Phenotypic Characterization of Syiar Markasa: An indigenous chicken of Meghalaya. Indian Journal of Hill Farming. 2025, 38(1):1-6; doi:10.56678/iahf-2025.38.01.1.

8. Kumar A, Mishra AK, Kumar A and Shahi B. Indigenous livestock wealth of Uttar Pradesh and Uttarakhand states of India - Status and prospects for characterization. Journal of Livestock Biodiversity. 2025, 14(1):13-19; Article URL: https://epubs.icar.org.in/index.php/JLB/article/view/170904

9. Yadav DK, Jain A, Kulkarni VS and Arora R. Morphometric and genetic characterization of Mouli sheep of Karnataka. Indian Journal of Small Ruminants. 2025, 31(1):20-24; doi:10.5958/0973-9718.2025.00010.X.

10. Chhabra P, Arora R, Ahlawat S, Gera R, Bagiyal M, Sharma U and Parsad R. Identification and in-silico impact assessment of missense mutations in key genes associated with hypoxic stress in Changthangi goats. Indian Journal of Biochemistry and Biophysics. 2025, 62:854-860; doi:10.56042/ijbb.v62i8.16577.

11. Bagiyal M, Ahlawat S, Khatak S, Chhabra P, Sharma U, Arora R, Sharma R, Parsad R and Gera R. Hepatic gene expression reveals functional diversity in indigenous chicken breeds. Journal of Livestock Biodiversity. 2025, 14(1):68-73; Article URL: https://epubs.icar.org.in/index.php/JLB/article/view/169856

12. Saini M, Sharma R, Raja KN and Mohan NH. Assisted Reproductive Technologies for Livestock Biobanking. Journal of Livestock Biodiversity. 2025, 14(1).